StarDist - Object Detection with Star-convex Shapes
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Updated
Apr 27, 2024 - Python
StarDist - Object Detection with Star-convex Shapes
A vision-language foundation model for computational pathology - Nature Medicine
AI-based pathology predicts origins for cancers of unknown primary - Nature
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Fiji plugin for object(s) detection using template(s) matching
Fast reconstruction of spatial networks from bioimages.
computer vision models for single-cell phenotyping
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
Guides and code for 3D nuclear instance segmentation
Track single cells and profile the cell cycle with PCNA fluorescence images
Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
Collection of useful (to me) python scripts for interacting with napari
Create a nice exploded visualization of segmented cells in a tissue.
CaMOS, a GUI for analysis of multimodal neuroscience datasets.
Image data and Python scripts for the course on Bioimage analysis with Napari
Connect Napari with FIJI/ImageJ
Visualise pcnaDeep single-cell tracking data
U-Net implementation in PyTorch for segmentation of bio-images
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