Bioinformatics
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
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This repository contains solutions to problems listed on the Rosalind project website
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Feb 2, 2019 - Rust
Work in progress NCBI's Common Tree alternative in the terminal
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Mar 24, 2023 - Rust
A library to read, manipulate and write various genetic sequencing formats.
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Jan 18, 2023 - Rust
The GMols server providing functionalities to the GMols client.
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Apr 14, 2024 - Rust
Rust bindings for the Antimony language of biochemical models.
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May 29, 2019 - Rust
A tool for filtering fasta sequences with threshold of specific bases (e.g. 'N'), written in Rust.
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Apr 5, 2022 - Rust
This tool allows users to simulate DNA sequences with mutations, variations, and bias. Ideal for quick experiments, testing, or academic purposes, it provides a simple yet powerful solution for generating synthetic DNA data in the Rust programming language.
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Jan 19, 2024 - Rust
Basic types and functions for pairwise alignment.
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Mar 22, 2024 - Rust
A Rust library for calculating the SASA/ASA for each atom in a protein. Based on the Shrake & Rupley algorithm.
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May 3, 2024 - Rust
An asynchronous, light-weight Rust library for interacting with bioinformatics web resources.
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May 3, 2024 - Rust
An ultrafast and memory efficient tool for phylogenomics
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Jun 1, 2024 - Rust
Rust implementation of an Augmented Interval List, with a scaling factor.
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Sep 22, 2019 - Rust
Rust parser for bioinformatic index formats
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Apr 5, 2021 - Rust
A flexible and fast sgRNA counter from FASTQ Files
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Feb 13, 2024 - Rust
PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.
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Dec 10, 2023 - Rust
DNA FASTA encoder for compressing raw sequences into searchable binary format (extract nth subsequence using random access without index file)
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Apr 11, 2024 - Rust
Command line tools for working with various gene annotation formats.
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Oct 26, 2022 - Rust