vertex model for simulating two-dimensional epithelial tissues
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Updated
Feb 16, 2022 - Mathematica
vertex model for simulating two-dimensional epithelial tissues
vertex model implementation to simulate biological tissue in 3D
a mathematica implementation of the cellular-potts model
implementation of the Bayesian Force Inference technique based on the work of Ishihara and Sugimura
single molecule tracking
an overlap based cell-tracker based on Chalfoun et al, Nat. Sci. Rep. 2016
code based on a study "https://journals.aps.org/prx/pdf/10.1103/PhysRevX.8.021025"
segment cell nuclei in a 3-D cluster
Computations required for https://doi.org/10.1103/PhysRevE.97.020402 and additional work
an attempt to model reaction diffusion using particles
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