Quickly identify and generate primers for diagnostic loci

Scripts and pipelines by Merce Montoliu-Nerin

Filter out sequences in FASTQ files that match a reference genome

Wrapper script that calls formatdb on nr database and then runs blastall against formatted db and parses the output.

Finds reciprocal-best-hit matches between two all-by-all BLAST searches

Annotate sequences by BLAST using NCBI taxonomy information

Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools

MFannot is a program for the annotation of mitochondrial and plastid genomes

MView extracts and reformats the results of a sequence database search or multiple alignment.

Collection of scripts for bacterial genomics