3D vertex model allowing scutoids
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Updated
Jun 7, 2024 - Python
3D vertex model allowing scutoids
Python code used to detect and track blebs frame-to-frame, and to analyze bleb size statistics before and after photoactivation.
Python implementation of the cellular automata model corresponding to Lange, Schmied et. al.
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
Deep Learning Library for Single Cell Analysis
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
A Python package for analyzing XYZ positional data of moving objects over time
Generate a package-manager-friendly archive of ABI connectivity maps registered in SAMRI standard space.
Project for the Applied Machine Learning (EI70360) class at TUM Summer Semester 2023.
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
3D shape analysis using deep learning
Quantifying 2D cell shape and epithelial tissue dynamics
Track single cells and profile the cell cycle with PCNA fluorescence images
Integrated Cell project implemented in pytorch
Several post-processing scripts that analyze signal distributions on and near uShape3D-generated cell surfaces.
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
Cell cycle inference in single-cell RNA-seq
Explainable AI model of cell behavior
Deep Learning Based Cell Segmentation
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