BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
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Updated
Sep 16, 2021 - Python
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
Automated 3D cell detection in very large images
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
Standalone cellfinder cell detection algorithm
OCELOT 2023: Cell Detection from Cell-Tissue Interaction
Efficient cell detection in large images using cellfinder in napari
Visualisation and analysis of brain imaging data
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
[IMAVIS] Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
Detecting and Tracking cancer (HeLa) cells using Computer Vision techniques. The project also detects cell division and analyses cell motion such as speed, distance travelled etc. The project uses OpenCV3 for image processing.
Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.
Cell detection in holographic images.
SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.
SoftCTM won 3rd place in the OCELOT 2023 Challenge. Multi-organ H&E-based deep learning model for cell detection, applicable for tumor cellularity/ purity/ content estimation.
Python code for merging and refinement of detected neurons in large 3D stacks
For my final project at University, I created a program that detect the cells within a photo and calculate the intensity per pixel. That allowed us to see the difference between the liposomes absorption in different types of cells
Cell localization and counting: 1) Exponential Distance Transform Maps for Cell Localization; 2) Multi-scale Hypergraph-based Feature Alignment Network for Cell Localization; 3) Lite-UNet: A lightweight and efficient network for cell localization
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