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cellranger

Here are 4 public repositories matching this topic...

manuelphilip / Single-cell-analysis-Snakemake-workflow

A Snakemake workflow for analysing single cell data obtained from Cell ranger platform using Seurat package

single-cell differential-expression seurat cellranger celltype-identification

Updated Jun 14, 2024
Python

IMS-Bio2Core-Facility / polya_liftover

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

python shell workflow snakemake liftover bioinformatics-pipeline multiqc reproducibility transcriptomics single-cell-rna-seq fastqc cellranger

Updated Jan 27, 2022
Python

raveancic / scRNAaltas_TNBC_mm

snakemake singularity pbs scrna scrna-seq-analysis snakemake-pipeline cellranger

Updated Mar 10, 2022
Python

mehdiborji / nanoranger

simplified cellranger for long-read data

linux bioinformatics python3 bioinformatics-pipeline pacbio computational-science 10x-genomics vdj-recombination tcr-repertoire single-cell-rna-seq minimap2 spatial-transcriptomics sc-rna-seq computational-genomics mixcr cellranger slide-seq tcr-seq nanoranger

Updated Sep 18, 2024
Python

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