Accurate and flexible loops calling tool for 3D genomic data.
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Updated
May 19, 2022 - Python
Accurate and flexible loops calling tool for 3D genomic data.
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model
Scripts to create cartoons of 3D genomes
Identification of dynamic changes in chromatin conformation is a fundamental task in genetics. In 2020, Galan et al. presented CHESS (Comparison of Hi-C Experiments using Structural Similarity), a novel computational algorithm designed for systematic identification of structural differences in chromatin-contact maps. Using CHESS, the same group …
Code for my Master project
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