A fast whole-genome aligner based on de Bruijn graphs
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Updated
Sep 29, 2022 - C++
A fast whole-genome aligner based on de Bruijn graphs
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
A fast constructor of the compressed de Bruijn graph from many genomes
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
Fast matching statistics in small space
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