Python library to facilitate genome assembly, annotation, and comparative genomics
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Updated
May 14, 2024 - Python
Python library to facilitate genome assembly, annotation, and comparative genomics
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
An analysis and visualization platform for 'omics data
Eukaryotic Genome Annotation Pipeline
A genome visualization python package for comparative genomics
Build a partitioned pangenome graph from microbial genomes
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Guided synteny alignment between duplicated genomes (within specified quota constraint)
A tool for drawing ANI clustermap between all-vs-all microbial genomes
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
Microbial Genome Circular plotting tool for comparative genomics using Circos
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Taxon-aware analysis of clustered protein sequences
Comparison of Hi-C Experiments using Structural Similarity.
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
A toolkit for prokaryotic comparative genomics
Plot genome alignment figure using progressiveMauve & genoPlotR
a versatile toolkit for processing and analyzing diverse types of sequence data
Easy-to-use web application for visualization and comparison of genomes in Genbank file
Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
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