The Ensembl Compara Perl API and SQL schema
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Updated
May 14, 2024 - Perl
The Ensembl Compara Perl API and SQL schema
CoGe (Comparative Genomics) Platform
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Scripts and procedures for detecting positively selected genes and codons in primates
Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.
Discover pseudogenes in a newly assembled genome, using reference gene/protein sequences.
TE annotation pipeline and analysis scripts for the insect mobilome publication by Petersen et al.
A tool for comparative genomics analysis that assesses the species relationship considering the phylogenetic distance provided by several gene trees.
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
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