A GLUE project for SARS-COV2, focused on genetic variation.
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Updated
Jun 3, 2021
A GLUE project for SARS-COV2, focused on genetic variation.
GitHub Repository associated to the study of H. glaber and M.musculus shared proteome for understanding their difference in maximum lifespan [ Hussin Lab, Université de Montréal ]
Data and code associated with the paper "Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package"
basic visualization of hmm profile matches to multiple fasta files
Functions for working with NCBI's Pathogen Detection data
An R package to identify and classify duplicated genes from whole-genome protein sequence data
Tools for performing I-ADHoRe co-linearity inference and visualization
AMRFinderPlus-Matrix contains script for processing the output files of AMRFinderPlus and generating a binary matrix that shows the presence or absence of antibiotic resistance genes, stress response genes, and virulence genes in each sample.
Extension to HBV-GLUE - incorporates all sequences from GenBank.
A GLUE project for Hepatitis E Virus (HEV)
FishComparativeAtlas is a pipeline to trace the evolution of sister duplicated chromosomes derived from whole genome duplication in teleost genomes.
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
R package for the statistical detection of orthogroups associated to plant traits pointing to specific genes that might be present of absence and are good candidate genes responsible for the plant trait.
CilioGenics is an integrated method for predicting the ciliary genes
A tool for comparative genomics analysis that assesses the species relationship considering the phylogenetic distance provided by several gene trees.
Generate GeneContent trees based on based the presence or absence of Genes from a given bacterial pan-genome using bidirectional BLAST results obtained with proteinortho
Structural variant calling and functional annotation in five mice lines selected for specific traits and a control line.
Scripts for Hill et al. (in review) 🌾
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