SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
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Updated
Jul 18, 2024 - C++
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
Python3 binding to mRMR Feature Selection algorithm (currently not maintained)
Protein structure alignment and search algorithm
Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
Open-source usearch
A gRNA database generation tool.
Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
Simulation of space-embedded molecular aggregates using Potts model
Stochastic simulator of mitochondria represented as a dynamic spaceless graph
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
Artificial Biological Intelligence
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
A high-performance, Pythonic language for bioinformatics
SciCell++ is an object-oriented framework for the simulation of biological and physical phenomena modelled as continuous or discrete processes.
The Biochemical Algorithms Library
Team Pythagoras of the HackBio Virtual Internship, 2021
BALL project 1.1.1 bugs-free version computational chemistry
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
published by Secomb et. al
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