A computational oncology application that analyzes and presents 3D MRI data of tumor growth in rat brains.
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Updated
Mar 9, 2018 - MATLAB
A computational oncology application that analyzes and presents 3D MRI data of tumor growth in rat brains.
A prior learning and sampling model informed tool for learning with Single Cell RNA-Seq data
PteraControls is a tool for designing control systems for flapping wing vehicles.
Mathematical modelling of microglial cells for the neuroscience community
Repository of code and information developed for computational biology research at UGA
MATLAB package for codon usage bias and NGS analysis
Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations
This project aims at running Monte Carlo Simulations to simulate life on earth.
Code to accompany the paper: "Computational quantification and characterization of independently evolving cellular subpopulations within tumors is critical to inhibit anti-cancer therapy resistance"
Graduate Student Mathematical Modeling Camp
Computational modeling of the short term pattern of cellular responses to epidermal growth factor
The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.
Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models
Software for inferring the intrinsic fitness landscape of poliovirus capsid protein (vp1) and comparing it with that of analogous proteins in HIV
Utilizes Markov Models to predict protein coding genes
FASTA Alignment search for BsaI and BsmBI restriction sites in the ORF6 protein to verify assertions made by Bruttel, et. al. in "Endonuclease fingerprint indicates a synthetic origin of SARS-CoV-2."
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Raman
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