Semantic segmentation of the connectomics volume with limited amount of labeled data. It is my research project at TU Dresden.
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Updated
Apr 13, 2024 - Python
Semantic segmentation of the connectomics volume with limited amount of labeled data. It is my research project at TU Dresden.
Access to DVID API
Final Project for CSCI 3397 - Biomedical Image Analysis. Using Pytorch Connectomics and 3D UNet model to implement 3D segmentation for synapse detection, using semi-unsupervised learning
Repository for code built during 3 month internship with Barabasi Lab (Oct 22 - Jan 23). In this project, we aim to build a diffusion-based method for density-equalizing the 3D connectome. Supervisors: Albert-Laszlo Barabasi & Csaba Both.
Virtual Fly Brain blog and documentation site
Study the connectome structure in C. Elegans by finding paths between a set of neuron classes present.
This repository aims to make analysis on human brain tissue (EM data). This work is done within the chair of Lichtman Lab. at Harvard University.
MICrONS TA3 connectivity database
Code for processing DTI data and performing tractography analyses
Code and data used in Bordt et al (2019) Synaptic inputs and connectivity of a sparsely branched ganglion cell in rabbit retina
This is the official C-PAC (Configurable Pipeline for the Analysis of Connectomes) brainlife.io app. Currently this app runs either the default pipeline or one of our preconfigured pipelines.
Repo for the article on "Modeling the Neurocognitive Dynamics of Language across the Lifespan"
Tools for accessing data from a catmaid server
Examining the effect of proofreading on inferences in connectomics
Visualize neural networks into a heirarchial graph using networkx. Weights and signs will be respected.
co-visualise confocal images of fly brains and connectome reconstructions in FIJI
A curated list of resources, papers and articles for 3D volumetric segmentation of connectomics in EM Images.
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