contigs
Here are 41 public repositories matching this topic...
Coverage Of COntigs Alignment
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Dec 4, 2018 - C++
A package for fast genomic sequences manipulation or interrogation
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May 16, 2021 - C++
get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
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Feb 15, 2021 - Perl
Split a multifasta file into many fasta files containing a single sequence, or extract a list of sequences/contigs. Supports compressed input and output files.
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Oct 2, 2023 - C++
Software to identify known plasmid sequence from metagenomic assembly using Minhash
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Jan 29, 2019 - Go
hierarchical clustering of DNA sequence using upcxx
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Sep 13, 2022 - C++
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
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Nov 26, 2023 - HTML
Visualize read-to-contig alignment during assembly analysis
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Aug 23, 2018 - Python
Sequencing of unculturable plant pathogens
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Nov 5, 2018 - Shell
Compare and shuffle heterozygosity using BED and VCF files
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Jun 7, 2021 - Python
Genome assembly - From theory to practice (and back)
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Apr 1, 2020
Refining Domain Boundaries and Performing Large Scale Parsing
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Sep 13, 2020 - Jupyter Notebook
Take information about snps on short sequence reads and accurately place the snps in a reference genome
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Nov 21, 2022 - Python
Toolkit for binning FASTA, FASTQ and FAST5 files according to taxonomic annotation
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May 26, 2023 - Python
DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report
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Jan 19, 2024 - Shell
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
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May 7, 2024 - Python
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Oct 13, 2019 - Python
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