Tools for Imaging Flow Cytometry
-
Updated
May 24, 2024 - R
Tools for Imaging Flow Cytometry
CyFlowRec is software for collecting FCS (Flow Cytometry Standard) files received via the serial port (RS232 serial interface) from a Partec flow cytometer sent via the TRANSFER function.
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
Repository for MODS subphenotype preprint, data, and code.
An R package for analyzing high-dimensional cytometry data using the tidyverse.
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Image Processing tools for Imaging Flow Cytometry
A Python library for reading and writing Flow Cytometry Standard (FCS) files
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
Easily install and load packages from the tidyomcis ecosystem
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Official implementation of GateNet
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data
an interactive explorer for flow cytometry data
HDStIM: High Dimensional Stimulation Immune Mapping
An R package for visualization and relational analysis of cell states, based on the Mapper algorithm from topological data analysis.
Add a description, image, and links to the cytometry topic page so that developers can more easily learn about it.
To associate your repository with the cytometry topic, visit your repo's landing page and select "manage topics."