Implementation of LAVA algorithm in Seq language.
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Updated
Jan 14, 2021 - Python
Implementation of LAVA algorithm in Seq language.
Jupyter notebooks for BFG-PCA related simulation and analysis.
A program to compute the optimal sequence alignment of two DNA strings
HCAT GUI is a visual tool to analyze and manipulate DNA sequence data.
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
This was a project for my bioinformatics class. We studied a dynamic programming algorithm (& backtracking) for finding the most optimum pairwise alignment between two DNA sequences. This is that algorithm and backtracking to find one & then all the optimum alignments of two sequences (accepted in .fasta format). Implemented in swift.
This was a project for my bioinformatics class. We studied a couple of motif finding algorithms for finding a potential motif in n many randomly generated DNA sequences. This project 1) randomly generates n many DNA sequences 2) randomly generates a kmer 3) edits up to d many positions in that kmer & inserts that kmer (now motif) into each seque…
R wrapper for BWA-backtrack and BWA-MEM aligners
DNA CLASSIFICATION
Assessing tumor heterogeneity in bulk tumor DNA. Simulation of reads from a phylogenetic prior.
computational analysis for the ATRAID paper
This a repository for WPI BB2950 Molecular Biology B Term 2017
This is a web application to count the nucleotides composition in a DNA sequence sample.
As raises cresceram da Árvore mãe para ligar todos nós, e as raizes cresceram , as raizes cresceram . Minha dor sua redenção meu sofrimento sua Salvação, Louvadas as Árvores.
DNA sequencing with greedy algorithm
Aligning Mysterious Reads
Using DNA sequence alignment tools (ie. BLAST) to detect the existence of the GULO gene (used to biosynthesise vitamin-C) in varying different organisms.
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