Identification of organisms from a stream of DNA sequences
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Updated
Jan 31, 2017 - C++
Identification of organisms from a stream of DNA sequences
Assessing tumor heterogeneity in bulk tumor DNA. Simulation of reads from a phylogenetic prior.
A simple game to teach an unspecialized audience how sequencing techniques work.
Aligning Mysterious Reads
Simple php script implementing a naive global alignment for dna sequences.
University work. Approximate aligner for long DNA sequences. Estimates Jaccard similarity from k-mers via minimizers and MinHash, then uses it as a sequence identity proxy.
R-package to analyse and quantify aberrations in DNA-sequencing data
Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.
A package primarily designed for analysing next generation sequencing DNA data from families with pedigree information in order to identify rare variants that are potentially causal of a disease/trait.
A collection of short and sweet python scripts I wrote for my dad that automate steps in the analysis of fasta files.
A method for variant graph genotyping based on exact alignment of k-mers
Implementation of random algorithms
Data Structures And Algorithms
computational analysis for the ATRAID paper
Clustering DNA reads by barcodes from raw reads. Old code written for my master-thesis.
This program can detect the already-known sequence in DNA.
This program can detect repeated sequences in DNA.
This a repository for WPI BB2950 Molecular Biology B Term 2017
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