Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
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Updated
Mar 9, 2023 - Python
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Network Diffusion Library - (for NetworkX and iGraph)
COVID-19 Hospital Impact Model for Epidemics
Python toolbox to evaluate graph vulnerability and robustness (CIKM 2021)
Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022
Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.
Open-source repository containing examples and documentation for the Cognizant XPRIZE Pandemic Response Challenge
Networkx implementation of the SIS epidemic model for large and heterogeneous networks
MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling
Network Diffusion Library REST Service
Stochastic Cellular Automata epidemic models in Python with 2D simulations
Library for epidemics on hypergraphs
Info/Data (global/italy) about COVID-19. PR welcome for other countries.
Provides classes to simulate epidemics on (potentially time-varying) networks using a Gillespie stochastic simulation algorithm or the classic agent based method.
Source code for the PLOS ONE (2022) and epiDAMIK@KDD 2021 paper "Simple Epidemic Models with Segmentation can be Better than Complex Ones."
COntagion Simulation And Source Identification: a Python package for graph diffusion source inference
A python implementation of ELE method in paper "Abrupt phase transition of epidemic spreading in simplicial complexes", PRR 2020
Python package for node immunization and network contagion simulation
Implementation of SIS epidemic model for large and heterogeneous networks
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