PyPop: Python for Population Genomics
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Updated
Jun 18, 2024 - Python
PyPop: Python for Population Genomics
a versatile toolkit for processing and analyzing diverse types of sequence data
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
Bio-ModelChecker: Using Bounded Constraint Satisfaction to Seamlessly Integrate Observed Behavior with Prior Knowledge of Biological Networks
A simple python3 program to compare aligned DNA/protein sequences.
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
a broadly applicable tool for automated gene identification and retrieval
HARE: Genetic Feature Enrichment Analysis Pipeline
Numerical model for life history evolution of age-structured populations
Simulating evolution of behavioral traits with Python
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