Tool for demultiplexing Illumina FASTQ reads when no index reads are available. Intended usage is a a recovery tool.

A Bioinformatics demo in Python working with FASTQ files and using the Modin library

A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.

Tools to analyze fasta or fastaq files with python.

Python scripts for data file parsing and bulk shell script analyses for downstream data processing tools

SYLENS: Sampling Yielding LEss Noticeable Samples

RADseq workflow built around STACKS v2 full-parallelized and automated using SNAKEMAKE

Converting DNA to RNA or RNA to DNA in a fastq file

Snakemake workflow for preprocessing fast files

Various tools for the analysis and manipulation of FASTA and FASTQ files.

A minimal wrapper to make ffq searches available via a REST API.

fastQ file is the key file for any NGS analysis. This repository contains scripts to manipulate, fetch, edit, grep, cut, plot etc from fastQ files.

Set of tools to deal with sequences in FastQ format

RNA-Seq Pipeline for processing paired-end FASTQ transcripts generated from Illumina sequencing. The pipeline trims adapter sequences, aligns transcripts to a specified region of interest on the reference genome, and facilitates downstream analysis.

Detect single-cell technology that was used to generate a set of FASTQ files or a single BAM file.

read data generator

DNA strands data quality analyzer

Combining epigenetic modeling with machine learning for colorectal cancer detection

converter raw sequence files

Single-ended FASTQ file deduplication