Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
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Updated
Mar 26, 2024 - Shell
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
less like viewer for fastq files
Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.
GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming contigs and converting FASTQ to FASTA. Written in Bash. All in one place.
simple and convenient program to convert fasta sequences to fastq sequences
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
Library-free horizontal transfer detection, with a focus on transposable element invasions
fqtk: A toolkit to perform common tasks on FASTQ reads. Rename FASTQ identifiers, print FASTQ statistics and convert FASTQ to FASTA. This program is written in AWK and Bash.
metagenome simulation for targeted and reduced-representation sequencing
🔬 A replication of ChiP-Seq analysis from an experiment regarding gene induction and repression during terminal erythropoiesis that are mediated by distinct epigenetic changes
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