ImageJ macros and scripts written at the imaging facility MRI
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Updated
May 21, 2024 - ImageJ Macro
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
ImageJ macros and scripts written at the imaging facility MRI
ImageJ functions and macros for working with thermal image files
ImageJ / Fiji macro to automatically correct white balance in RGB images
quantixed FIJI update site + more
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
SMA is an ImageJ macro to automate the analysis of muscle architecture from B-mode ultrasound images.
"ça y est j'ai une idée! non deux, trois, oh lala, oh lala j'ai plein d'idées..."
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
ImageJ macros and plugins.
A repository containing ImageJ macros for the Snyder Lab
A simple macro to analysis spheroid areas
ImageJ macro for calculation of nuclear to cytoplasmic ratio
ImageJ/Fiji macro that crops any given image stack without having to load it into memory first.
ImageJ macros that automate the workflow of thresholding and analyzing the size and intensity of objects/regions in microscope images.
Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata
Macros for FIJI in the FIJI Macro Language
This is a full macro for images analysis, cell count and co-staining cell count. Different options are available to analyse your image. You can count co-staining cell in unlimited number of images. the counting is done by size. There is an option to batch image analysis to save some time. You can personnalize the code and the analysis to maximiz…
Collection of macros for image processing in Fiji/ImageJ