R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
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Updated
Feb 15, 2017 - R
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
This repo is deprecated. Use https://github.com/plantarum/flowPloidy instead!
Basic functionality to create circos plot that shows concurrent positivity of flow cytometry markers.
Immunology Informatics - Big Data Analysis in Immunology - Tutorials
Correction for flow cytometry histograms when part of the population is in noise
cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indice…
Shiny Modules for visualizing flow cytometry data
batch-titration is a container that allows for one or more fcs files to be automatically processed (using AWS Batch or other runners). It produces an html document.
Opens two or more FCS files and creates new files that contain only the Channels common to all.
Plots the NRS (non-redundancy score) of selected markers from one or more FCS files
Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.
FauxFlow - Analyze Single Cell Genomics Data in a Flow Cytometry Paradigm
R Script to plot the average event rate in flow or mass cytometry (FCS) files
Retrieve index sorted data and visually explore .fcs data files.
Data for Imaging Flow Cytometry
Conversion from light scattering measured by SeaFlow to cell diameter
Very fast method to read number of events from some / all FCS files in a directory
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