napari-findaureus: A tool designed to identify bacteria in infected bone tissue images obtained via Confocal Laser Scanning Microscopy (CLSM).
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Updated
Apr 20, 2024 - Python
napari-findaureus: A tool designed to identify bacteria in infected bone tissue images obtained via Confocal Laser Scanning Microscopy (CLSM).
Lego based fluorescence microscope
A python code for analyzing photobleaching in fluorescence microscopy from a time series TIF image stack
This open-source software package allows in-silico microscopy of molecular simulations such as molecular dynamics, monte carlo, etc.
napari plugin for analyzing fluorescence-labeled proteins redistribution
PyFDAP is a Python-based analysis framework for Fluorescence Decay After Photoconversion (FDAP) experiments.
Quantitation of migration of fluorescent spots into regions of interest.
pyLifetimeSpectraGenerator - A simple Python program for the generation of synthetic lifetime spectra consisting of discrete or distributed characteristic lifetimes.
A program designed to acquire brain imaging data using intrinsic, GCaMP fluorescence and IR laser speckle optical imaging in awake mice.
Helper module for working with data from the SGM Beamline
DMLLTDetectorPulseDiscriminator - A supervised machine learning approach for shape-sensitive detector pulse discrimination in lifetime spectroscopy applications
Zebrafish embryo fluorescence quantification
Calcium Imaging Analyzer (CaImAn) consists of a bunch of scripts written in python and put together to speed the analysis of calcium imaging experiments performed with the NIS-Elements Advanced Research software from Nikon.
A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.
Read PicoQuant PTU and related files
Track Fluorescent Protein in Live Cell images with OpenCV
Laboratory for Fluorescence Dynamics (LFD) file formats
Read Olympus image files (OIF and OIB)
RNA smFISH oligos/probes design tool
Read Becker & Hickl SDT files
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