An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach
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Updated
Jun 2, 2024 - Python
An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach
Read Olympus image files (OIF and OIB)
Read Becker & Hickl SDT files
Laboratory for Fluorescence Dynamics (LFD) file formats
Point Spread Function calculations for fluorescence microscopy
Read PicoQuant PTU and related files
Tools for computational pathology
Helper module for working with data from the SGM Beamline
Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration
napari plugin for analyzing fluorescence-labeled proteins redistribution
napari-findaureus: A tool designed to identify bacteria in infected bone tissue images obtained via Confocal Laser Scanning Microscopy (CLSM).
Self-Supervised Vision Transformers for multiplexed imaging datasets
A python code for analyzing photobleaching in fluorescence microscopy from a time series TIF image stack
Official Python implementation of the 'Sparse deconvolution'-v0.3.0
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
RNA smFISH oligos/probes design tool
A program designed to acquire brain imaging data using intrinsic, GCaMP fluorescence and IR laser speckle optical imaging in awake mice.
A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.
GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph
Calcium Imaging Analyzer (CaImAn) consists of a bunch of scripts written in python and put together to speed the analysis of calcium imaging experiments performed with the NIS-Elements Advanced Research software from Nikon.
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