Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
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Updated
Feb 26, 2024 - R
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
MSigDB gene sets for multiple organisms in a tidy data format
Lightweight Iterative Gene set Enrichment in R
Evolutionary Transcriptomics with R
Package to calculate functional similarity between genes https://biocor.llrs.dev
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …
Full results to accompany Zhu and Stephens (2018).
R wrapper for ermineJ
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
Ready-to-use curated genesets for cinaR
Code and resources related to the olfactory regeneration project
Experimental version of data package associated with chipenrich
Gene sets and functions for working with them.
Tools to prepare and analyze a priori molecular signatures, such as gene sets.
Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
muleaData is an ExperimentHubData Bioconductor package for the mulea R package
A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)
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