⚡ ♒ Rapid prokaryotic genome annotation
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Updated
Apr 10, 2024 - Perl
⚡ ♒ Rapid prokaryotic genome annotation
Extensive de-novo TE Annotator
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
A parallel wrapper for LTR_FINDER
Genome Annotation Without Nightmares
A toolkit for annotation of transposable element families from unassembled sequence reads
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
A tool for discovering transposable elements and describing patterns of genome evolution
Toolkit for preparing genomes for submission to NCBI
A repo contains historical and updated MTEC libraries.
Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.
A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines; I was a developer on this project at The Institute for Genomic Research/J. Craig Venter Institute from 2005 to 2008.
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
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