Tools for fast and flexible genome assembly scaffolding and improvement
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Updated
Feb 14, 2024 - Python
Tools for fast and flexible genome assembly scaffolding and improvement
Viral genomics analysis pipelines
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
Learning to untangle genome assembly with graph neural networks.
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Long-reads Gap-free Chromosome-scale Assembler
⛓ Correct misassemblies using linked AND long reads
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
A program for assessing the T2T genome continuity
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
An algorithm for centromere assembly using long error-prone reads
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
Reference genome quality scores
B73Ab10 genome assembly methods
⛓️ Construct a Physical Map from Linked Reads
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning
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