Software for creating and comparing genome fingerprints.
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Updated
Mar 31, 2024 - Perl
Software for creating and comparing genome fingerprints.
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
Make personal protein databases using next generation sequencing data. (Personal copy)
Automated pipeline for HGT and contaminant detection in an assembled, annotated genome
Merge transcriptome read-to-genome alignments into non-redundant transcript models
A computational toolkit of fast and automatical identification of back-splice junctions of potential circular RNAs (circRNAs) from RNA-seq data.
Organelle Genome Assembler
Script to parse the declared genome (from XML) in EGA submissions
parallelLastz: Running Lastz in parallel
BioSeq utilities written in Perl can be used to decode biological sequences (bio-sequence in short) such as nucleotides in a nucleic acid (RNA or DNA) or amino acids representing a protein.
get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
A utility to convert chromosome coordinates between different assemblies.
A repository for scripts used in genome project ➡ https://tiramisutes.github.io/Genome_Scripts/
quadraG: a fast multithreading based tool to detect G-quadruplexes in genome or transcriptome sequences
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Targeted Amplicon Bisulfite Sequencing Analysis Tool
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