A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
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Updated
Jun 3, 2024 - Python
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Phigaro is a scalable command-line tool for predicting phages and prophages
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
Bedfile perturbation tool
Very fast and efficient detection of multiple overlaps between genomic regions. For details on the algorithm and the implementation, please refer to the following publication: Aszódi, A. (2012): MULTOVL: Fast multiple overlaps of genomic regions. Bioinformatics 28: 3318-3319.
The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
Makefile for reference annotations for genes & genomic regions
BedSect web server source code repository.
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
Filter fastq file based on bed regions
C++ library for genomic region based storage and querying
Thesaurus for genetic variants
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