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Feb 13, 2018 - Python
genotyping
Here are 60 public repositories matching this topic...
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
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Feb 10, 2019 - C++
A method for variant graph genotyping based on exact alignment of k-mers
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Apr 1, 2019 - C++
Perl software to cluster SNPs based on its genotype.
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Jul 18, 2019 - Perl
GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
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Aug 20, 2019 - Shell
📢🎯 Generic typing tool from amplicons and/or in silico PCR
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Oct 16, 2019 - Perl
Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences
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Jan 12, 2021 - C++
Visualisation application for Klebsiella genotypes generated by Kleborate.
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Mar 8, 2021 - R
Benchmarking variant callers for long read data
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Jun 28, 2021 - Python
Genotyping of segregating mobile elements insertions
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Jul 29, 2021 - Perl
workflow that generates genotype fingerprints consumed by SampleFingerprinting workflow
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Nov 12, 2021 - WDL
Microsatellite genotyping
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Nov 16, 2021 - Python
An efficient genetic data imputation pipeline
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Apr 7, 2022 - R
Joint Genotyping in MIT Fraenkel Lab with ALS Genomics + 1000 Genomes Data
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May 10, 2022 - Jupyter Notebook
Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
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May 24, 2022 - Python
Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.
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May 26, 2022 - Python
TFM_AliciaAranda_Pipeline
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May 30, 2022 - R
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
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Jun 9, 2022 - Python
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
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Jul 2, 2022 - Python
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Oct 3, 2022 - Forth
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