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odoluca / Fast-NW-and-SW-Pairwise-alignment-using-numba-JIT

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This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment

python cython smith-waterman needleman-wunsch python-3-6 alignment protein-sequences numba dna-sequences pairwise pairwise-alignment pypy3 gotoh
  • Updated Sep 22, 2021
  • Python

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