📊 A universal enrichment tool for interpreting omics data

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

Brings bulk and pseudobulk transcriptomics to the tidyverse

MSigDB gene sets for multiple organisms in a tidy data format

Lightweight Iterative Gene set Enrichment in R

Enrichment Networks for Pathway Enrichment Analysis

Take command of your set enrichment analyses.

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

Interpretation of RNAseq experiments through robust, efficient comparison to public databases

Flexible gene set enrichment analysis

GSEA plots in ggplot2

Function Enrichment analysis and Network construction

Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data

Computational protemics analysis of cancer cell-lines at the level of single-cells

R Markdown script to perform bioinformatic analysis on RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).

Repository of R scripts for analysis of gene expression data

some scripts to process transcriptomics and Chip-seq data

Gene set enrichment network visualization

Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School

Gene Enrichment Identifier