Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
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Updated
May 26, 2016 - Go
Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
Code supporting Beitel et al. (2014) regarding strain- and plasmid-level metagenome deconvolution using high-throughput chromosome conformation capture.
An archived version of the InteractionSet repository, see https://github.com/LTLA/InteractionSet for the active version.
A 3D genome data processing tutorial for ISMB/ECCB 2017
Tool for chromatin 3D structure reconstruction from 3C experimental data. Improvement of ShRec3D.
⚡ Repository dedicated to hosting files related to a Line Follower Robot based on PIC16F84A.
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Comparison of TAD callers with strategies for parameter selection.
Assembler for HiC data
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