Inputs a QIIME microbiome file. outputs it into a file similar to that used in BaseSpace
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Updated
Dec 5, 2016 - Python
Inputs a QIIME microbiome file. outputs it into a file similar to that used in BaseSpace
A front-end GUI to map NGS DNA sequencing data using HISAT backend tool. This software offers robust seamless queueing of the mapping operations along with parameter memory for quick and easy customization.
Fast demultiplexing of Illumina FASTQ files using Python.
generates reference matrix of average beta methylation values
Python interface to the GenoLogics LIMS server via its REST API.
Demultiplexing utility, companion to flowcelltool.
A pipeline to go from raw sequencing data to high quality bins and pretty plots.
Tool for demultiplexing Illumina FASTQ reads when no index reads are available. Intended usage is a a recovery tool.
A pipeline to map and visualize in vitro acquired CRIPSR spacers from Illumina sequence data. McKitterick, A. C.; LeGault, K. N.; Angermeyer, A.; Alam, M.; Seed, K. D. Competition between mobile genetic elements drives optimization of a phage-encoded CRISPR-Cas system: insights from a natural arms race. Phil. Trans. R. Soc. B 2019, 374, 20180089…
MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
A repository for generating de-multiplexing report for Illumina sequencing runs using Pyspark
A workflow designed to clean fastq files for the SEACONNECT project
Salmonella typhi; analysis pipeline for Illumina reads
Parse illumina MiSeq SampleSheet.csv files and convert to JSON
Listen for messages indicating the arrival of a new illumina run. When a new run arrives, create symbolic links (aka. 'symlinks') from .fastq.gz files in the run to a specific directory.
Watch directories for the creation of illumina sequencer outputs. When detected, publish messages with details of the run to a TCP socket.
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