risk modelling for virbrio infections and estimating the attributable rates
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Updated
May 2, 2024 - Python
risk modelling for virbrio infections and estimating the attributable rates
the peptide immune annotator pipeline (PIA-P) a collection of bash and Python scripts used running peptide HLA interaction from a variety of inputs
odd ratios estimator and likelihood of occurrence in geographical location
Python package for infectious disease modelling
Based on labeled data, multi-class and multi-label scoring of outbreak detection, annotation or prediction algorithms.
Prediction infectious strains of Influenza A virus for human
IDseq infectious disease command-line interface
A multivariate multi-step LSTM forecasting model for tuberculosis incidence with model explanation
Mycobacterial pipeline
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
A tool for modeling infectious diseases.
Order and orientation of complete bacterial genomes
Python SIR-x model implementation
Assembling the cause of phenotypes and genotypes from NGS data
Predict plasmids from uncorrected long read data
Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Simulating epidemics using Python
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
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