kallisto
Here are 40 public repositories matching this topic...
A single-cell RNAseq pipeline for 10X genomics data
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Jun 26, 2024 - Nextflow
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
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Jul 12, 2024 - Python
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
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Jun 19, 2022
A guide to using a Seurat object in conjunction with RNA Velocity
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Dec 25, 2021
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
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Jul 14, 2024 - Python
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
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Jun 3, 2018 - Nextflow
Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.
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Jul 24, 2019 - HTML
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
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Aug 23, 2019 - Python
Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system
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Aug 7, 2023 - C
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
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Jul 24, 2022
Identification of viral RNA in single-cell RNA sequencing data
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May 15, 2024 - Jupyter Notebook
kallisto task for RNA-seq workflow
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May 20, 2020 - Kotlin
Iso-seq and Kallisto integration
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Jan 29, 2020 - Python
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Sep 11, 2018 - Shell
Differential gene expression analysis of Nannochloropsis oceanica growth with or without beneficial/harmful bacteria.
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Jun 30, 2022 - Roff
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