A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
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Updated
Jan 23, 2021 - Python
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kmer-frequency-count
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Counts the number of occurrences of each k-mer in a DNA string
python
programming
biology
computational-biology
dna
matplotlib
microbiology
dna-sequences
kmer-frequency-count
kmer-counting
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Updated
Jan 25, 2022 - Python
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
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Mar 28, 2022 - Python
Generate K-mer spectra to observe modalities of distributions
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Updated
Nov 18, 2022 - Python
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
python
diversity
plotly
protein
dask
fastq
k-mer-counting
k-mer-frequency
divideandconquer
metagenomic-analysis
metatranscriptomic-analysis
kmer-frequency-count
nucleotides
diversity-estimation
database-independent-analysis
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Updated
Nov 30, 2022 - Python
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