LDlinkR
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Updated
Apr 17, 2024 - R
LDlinkR
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
🔖 Get SNP proxies from the 1000 Genomes Project.
Adjacency-constrained hierarchical clustering of a similarity matrix
Genomewide Epistasis Analysis on Bacteria
Generating a weighed average of LDSTORE matrices for locus-based fine-mapping.
Calculating linkage disequilibrium in human populations of interest
echoverse module: LD downloading and processing
Visualizing Linkage Disequilibrium using 1000 Genomes Data
Impact of LD regional heterogeneity on genome prediction and heritability estimation in livestock
R package for the zalpha suite of selection statistics
Implement R-prime measure of linkage disequilibrium
Plot .ld with LDHeatmap (first case applied to Equine 65k Microarray)
LDlinkR: An R package for calculating linkage disequilibrium in human populations of interest
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