Tactic MMIC translator for MDAnalysis/MMSchema
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Updated
Jan 3, 2022 - Python
Tactic MMIC translator for MDAnalysis/MMSchema
About This is code for analyzing the xtc file used in GROMACS, a molecular dynamics simulation program.
Cookiecutter repo for MD analysiS -standalone-.
This is code for analyzing the gro/xtc file used in GROMACS, a molecular dynamics simulation program.
Analyze interactions between two fully-charged PAA chains with varying amounts of CaCl2 added
Analysis postprocessing utilities for my molecular dynamics simulations of LiTFSI-Ether mixtures
Tutorial for SPIDAL presentation at workshop, showing how to use Midas radical.pilot to analyze an ensemble of MD trajectories with Path Similarity Analysis (as implemented in MDAnalysis).
Command line interface for MDAnalysis
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Molecular Dynamics - Simulation Analysis and Preparation Suite
Benchmarking MDAnalysis with Dask (and MPI). Supplementary Information for SciPy 2017 paper.
Compilation of different scripts used for my MD analysis
An MDAKit implementing a Python interface for the HOLE program.
Benchmarking MDAnalysis with dask.
Analysis of molecular dynamics trajectories or conformational ensembles in terms of spin-label distances as probed in double electron-electron resonance (DEER) experiments.
A batteries-included toolkit of analysis modules and helper functions for molecular dynamics (MD) simulations.
Scripts to prepare and analyze molecular dynamics simulations
SAPT energy calculator built using MDAnalysis and Psi4
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