Mechanistic Bayesian Machine Learning model of eczema dynamic

This is the computer code corresponding to "Microbial physiology governs the oceanic distribution of dissolved organic carbon in a scenario of equal degradability"

Matlab code for the network model of DOC compounds and microbes, corresponding to the publication in Scientific Reports (2019): "Long-term stability of marine dissolved organic carbon emerges from a neutral network of compounds and microbes".

Ecosystem model developped by Ludiwine Clouzot and Peter A. Vanrolleghem

Master thesis project in 2022, at the @mackelab: In this project, simulation based inference is used to infer micro-parameters of the brain

A mechanistic model to simulate the spread of Ascochyta blight in a chickpea field

Library with kinetic models to simulate microbial growth

Simulate industrial fermentation processes and generate large data sets resembling real systems 🚀

Simulation model of the biomass of grassland plant species

Mechanistic modelling of outbreak response interventions to human vaccine-preventable diseases: a systematic review of modelling practices before COVID-19

Demonstrating the use of Prefect to orchestrate the creation of machine learning surrogate models as applied to mechanistic crop models.

Mechanistic individual mobility generation models with a synthetic dataset

Quarto source code for my master's thesis "Remote Sensing of Foliar Nitrogen in Californian Almonds" (2023)

This work aims to explore the differences between Python and Julia and to propose a detailed overview of the best-suited applications for each language. The repository includes mechanistic models in both Python and Julia.

Nitrogen balance model components and test procedures

CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.

My GitHub Page

An F# library for mechanistic modelling of ecological time series data

Repository for the paper "High mountains, wide rivers: mechanisms that shaped the linguistic diversity patterns in the Neotropics"

Advanced Multilanguage Interface to CVODES and IDAS