Accurate sample inference from amplicon data with single nucleotide resolution

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

JAMP - Just Another Metabarcoding Pipeline

R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)

Scripts for paper Vaulot et al. 2022

NanoASV official repo

Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes

Shiny application to access metaPR2 database

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

Metabarcoding pipeline

Metabarcoding Joining Obitools3 & Linkage Networks In R

Public repository of data and analyses from Dirks and Jackson (2020), "Community structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy", Applied and Environmental Microbiology 86 (19)

Code and plots for the paper of Walden et al., 2021, https://doi.org/10.1093/femsec/fiab081

R functions and workflow for submitting amplicon sequence data to the ENA.

Metabarcoding projects

Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."