Javascript and D3 are used to create an interactive dashboard to explore a microbes on human subjects dataset.
-
Updated
Oct 6, 2020 - JavaScript
Javascript and D3 are used to create an interactive dashboard to explore a microbes on human subjects dataset.
Using Plotly, JavaScript, d3, and Bootstrap, created an interactive dashboard to explore the Belly Button Biodiversity dataset, which catalogs the microbes that colonize human navels. The dataset reveals that a small handful of microbial species (also called operational taxonomic units, or OTUs, in the study) were present in more than 70% of peo…
Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
Build an interactive dashboard to explore the Belly Button Biodiversity dataset, which catalogues the microbes that colonize human navels by using Plotly and D3.js libraries.
Interactive dashboard to explore the Belly Button Biodiversity dataset using Plotly for Javascript.
Neutral evolution modeling of microbes.
Classification of stressful microbial growth conditions using gene fitness data and support vector machines
This repository contains python code used to create figures in the accompanying manuscript.
Classification model predicting the type of microbe from provided features
Significance of non-microbial processes in organic matter decompositon in ecosystems across scales
Deep learning-based instance segmentation tool for roundish objects in 2D and 2D+t data
To explore biotic associations of microbes at the community level. See the detailed package tutorial (https://joshualiuxu.github.io/).
A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism
Microbe-Metabolite INteractions-based metabolic profiles Predictor
Python simulation for visualizing the net geochemical outcomes of microbial metabolism - referred to here as "dead-end states." Poster presentation at Univ. Oregon Undergrad Symposium 2022.
A theorectical investigation into mechanisms of drought legacy formation and influencing factors in soil microbiomes using DEMENTpy.
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
Omero based integrated Workflow for annotating Microbes in the Cloud
Add a description, image, and links to the microbes topic page so that developers can more easily learn about it.
To associate your repository with the microbes topic, visit your repo's landing page and select "manage topics."