NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
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Updated
Jun 22, 2024 - Python
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
🦠📇 Microbial genomes-to-report pipeline
Tool for generating influenza A virus genome sequences from FASTQ data
Build a partitioned pangenome graph from microbial genomes
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Automated genomic analysis of HCV sequence data
Lightweight bioinformatics pipeline for microbial genome recovery
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
A genome visualization python package for comparative genomics
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Evaluating Nanopore-based bacterial variant calling
Nextflow Wrapper for TBProfiler
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site
Automated upload of sequence data to IRIDA platform
Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
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