Finding viable restriction enzymes from NEB given an amino acid sequence.
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Updated
Jul 22, 2022 - Python
Finding viable restriction enzymes from NEB given an amino acid sequence.
In silico Promotor Detektion von Oberflächen-assoziierten Faktoren und ausgewählten Resistenzgenen in Staphylococcus aureus
Examination of microbial diversity patterns
Code used to analyze genetic changes between donor and recipient strains in the gut microbiome dataset used in the Li et al. 2016 FMT study
multi-locus sequence type clade classifier for Clostridioides difficile
Curve Growth modeling-IPASS project
My Microbiology research in the Ujor Laboratory at UW-Madison.
Simple workflow for the analysis of helicos rna seq reads
Continuation analysis tools from pass, a gene centric assembly tool but written in python
This code will assign two bacterial species to a given number of students for a microbiology lab project.
Counts the number of occurrences of each k-mer in a DNA string
This project is instrument for my work as microbiologist. It helps me to keep data and make graphics based on this information, which help me to optimize the biotechnology processes.
A microbial challenge study is a laboratory study in which a food product is artificially-inoculated with pertinent pathogenic or spoilage microorganisms in order to determine their behavior in the product; and thus whether those organisms present a risk to the microbial safety or quality of the product.
MicroComp is a program designed to compare the environmental compatibility between microbes and the different zones within the rhizosphere of a plant given specific data outlined in the READ ME.
Run SEER with fewer headaches
Code to measure the square area of colonies in an image file and export the data.
gmx_wheel+ is a tool for analysing and visualizing the orientation of helical antimicobial peptides based on molecular dynamics simulations
From second generation sequencing reads to annotated bacterial genome
Repository accompanying the paper "Flow cytometric single-cell identification of populations in synthetic bacterial communities".
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