From second generation sequencing reads to annotated bacterial genome
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Updated
Nov 21, 2015 - Python
From second generation sequencing reads to annotated bacterial genome
Run SEER with fewer headaches
recogniZing gEnome seqUences in metagenomic aSSemblies
Bioinformatics: scripts and tools in use at the Microbiology and Infection Unit at the University of Warwick - and a place to seek out help!
Continuation analysis tools from pass, a gene centric assembly tool but written in python
Run several analysis on bacterial genomes
Examination of microbial diversity patterns
Simple workflow for the analysis of helicos rna seq reads
Mobile Genetic Elements Coordinates Extractor
A package for automated cell colony counting
process raw reads from ubiome
Code to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.
In silico Promotor Detektion von Oberflächen-assoziierten Faktoren und ausgewählten Resistenzgenen in Staphylococcus aureus
Repository accompanying the paper "Flow cytometric single-cell identification of populations in synthetic bacterial communities".
A library for analyzing time-series of dividing micro-organisms
Synthetic PHasE Rate Estimator by single metagenome sequence
Tn3 Transposon/Toxin Finder
🦠💪 Investigating gBGC in Rhizobium leguminosarum
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