Aggregate results from bioinformatics analyses across many samples into a single report.
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Updated
Jun 14, 2024 - JavaScript
Aggregate results from bioinformatics analyses across many samples into a single report.
Test data for MultiQC.
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
Align reads over a reference genome, filter aligned-reads, and mark duplicates
nice utility methods for Nextflow pipelines
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
Run multiple metagenome filtering programs using Docker containers
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
A miniature example of a MultiQC plugin.
Build Docker container for MultiQC and (optionally) convert to Apptainer/Singularity.
Add a description, image, and links to the multiqc topic page so that developers can more easily learn about it.
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