A tool for Nanopore Amplicon Real-Time (NART) analysis.
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Updated
Oct 5, 2023 - Python
A tool for Nanopore Amplicon Real-Time (NART) analysis.
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
Official implementation of paper "Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Nanopore Readouts" (Nano Letters)
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
This is just small command line pipeline to simplify going from ONT Unbasecalled data using Guppy to Assembly using Flye, all of the tools are existing tools.
Graph Convolution based model for de novo identification of nucleotide modifications
A repository to benchmark and automate genome assembly evaluation. Utilize scripts for Dragonflye with diverse polishing models on Illumina and Nanopore reads to fine-tune genome assemblies
A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic data
Simulation of Nanopore Sequencing Signals Based on BiGRU
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Ribosomal operon sequences database for mapping and taxonomy assignment
A long read nanopore genome assembly and error correction pipeline
Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.
SegPore is a software to segment the raw Nanopore direct RNA sequence, and to estimate various RNA modifications and secondary folding structures.
Consensus calling for Amplicon Nanopore Sequencing
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
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